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NAVis

Tools for Neuron Analysis & Visualization
README.md

We make tools for processing and analysing of neurobiological data.

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  1. navis navis Public

    Python library for analysis of neuroanatomical data.

    Python 135 37

  2. pymaid pymaid Public

    Python library to interface with CATMAID servers. Fully interoperable with navis.

    Python 26 13

  3. skeletor skeletor Public

    Extraction of 3D skeletons from meshes.

    Python 261 31

  4. fafbseg-py fafbseg-py Public

    Tools to work with the FlyWire connectome. Fully interoperable with navis.

    Python 29 11

  5. navis-flybrains navis-flybrains Public

    Transforms for navis that enable mapping between different Drosophila template brains.

    Jupyter Notebook 36 7

  6. sparse-cubes sparse-cubes Public

    Mesh generation, skeletonization, voxelization of sparse 3D data.

    Python 26 1

Repositories

Showing 10 of 21 repositories
  • coda Public

    Next-Gen Connectome Data Analysis

    navis-org/coda's past year of commit activity
    TypeScript 5 MIT 0 0 0 Updated Sep 24, 2026
  • coda-mcp Public

    MCP server for building connectome analysis workflows in Coda (coda.science) — neuPrint, CAVE/FlyWire, CATMAID — from Claude, ChatGPT or any MCP client.

    navis-org/coda-mcp's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Sep 17, 2026
  • coda-zoo Public

    Repository for Coda workflows

    navis-org/coda-zoo's past year of commit activity
    0 MIT 0 0 0 Updated Sep 7, 2026
  • navis Public

    Python library for analysis of neuroanatomical data.

    navis-org/navis's past year of commit activity
    Python 135 GPL-3.0 37 31 16 Updated Sep 6, 2026
  • navis-flybrains Public

    Transforms for navis that enable mapping between different Drosophila template brains.

    navis-org/navis-flybrains's past year of commit activity
    Jupyter Notebook 36 GPL-3.0 7 6 2 Updated Sep 2, 2026
  • sparse-cubes Public

    Mesh generation, skeletonization, voxelization of sparse 3D data.

    navis-org/sparse-cubes's past year of commit activity
    Python 26 GPL-3.0 1 0 0 Updated Aug 9, 2026
  • pymaid Public

    Python library to interface with CATMAID servers. Fully interoperable with navis.

    navis-org/pymaid's past year of commit activity
    Python 26 GPL-3.0 13 36 3 Updated Aug 8, 2026
  • skeletor Public

    Extraction of 3D skeletons from meshes.

    navis-org/skeletor's past year of commit activity
    Python 261 GPL-3.0 31 26 0 Updated Aug 8, 2026
  • octarine-navis-plugin Public

    Octarine plugin to visualize navis objects

    navis-org/octarine-navis-plugin's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Aug 2, 2026
  • navis-fishbrains Public

    Template brains and transforms for fish datasets

    navis-org/navis-fishbrains's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jul 30, 2026
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