repository_type: pipeline

nf_core_version: 4.0.3

lint:

files_exist:

- .github/workflows/nf-test.yml

- lib/Utils.groovy

- lib/WorkflowMain.groovy

- lib/WorkflowOncoanalyser.groovy

- .github/workflows/linting_comment.yml

files_unchanged:

- assets/nf-core-oncoanalyser_logo_light.png

- docs/images/nf-core-oncoanalyser_logo_dark.png

- docs/images/nf-core-oncoanalyser_logo_light.png

- .github/workflows/branch.yml

- .github/workflows/linting.yml

multiqc_config: false

nextflow_config:

- config_defaults:

- params.fastp_umi_length

- params.fastp_umi_skip

nf_test_content: false

template:

org: nf-core

name: oncoanalyser

description: A comprehensive cancer DNA/RNA analysis and reporting pipeline

author: Stephen Watts

version: 3.0.0

force: false

outdir: .

skip_features:

- gpu

- nf-test

is_nfcore: true