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@rordenlab Chris Rorden's Lab

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    60 repositories

    • niimath

      Public
      niimath - a clone of fslmaths. Try the live demo:
      C
      •
      Other
      •25•85•4•0•Updated Sep 24, 2026Sep 24, 2026

    • brainchop-next

      Public
      Minimal brainchop edge based web page
      MIT License
      •0•0•0•0•Updated Sep 24, 2026Sep 24, 2026

    • dcm2niix

      Public
      dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
      researchjpegdicom
      researchjpegdicomneurosciencemrineuroimagingnifti-formatmri-imagesdicom-imagesnifti
      C++
      •
      Other
      •269•1.2k•3•1•Updated Sep 23, 2026Sep 23, 2026

    • SYNcro

      Public
      Cross-platform clinical image normalization
      0•0•0•0•Updated Sep 14, 2026Sep 14, 2026

    • edgefire

      Public
      Fast client-side diffeomorphic image registration
      TypeScript
      •
      Other
      •0•2•0•0•Updated Sep 10, 2026Sep 10, 2026

    • lightNIIng

      Public
      NeuroImaging Infrastructure built on permissively open source tools
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Aug 27, 2026Aug 27, 2026

    • TORTOISEV4

      Public
      Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation
      C++
      •
      GNU General Public License v3.0
      •9•0•0•0•Updated Aug 23, 2026Aug 23, 2026

    • svht_denoise

      Public
      Image noise reduction using optimal singular value hard thresholding
      C
      •
      Mozilla Public License 2.0
      •1•2•0•0•Updated Aug 17, 2026Aug 17, 2026

    • medic_bench

      Public
      Multi-Echo DIstortion Correction (MEDIC) algorithm validation and performance datasets
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•2•0•0•Updated Aug 16, 2026Aug 16, 2026

    • greedy

      Public
      Very fast greedy diffeomorphic registration code
      C++
      •
      Apache License 2.0
      •22•0•0•0•Updated Aug 3, 2026Aug 3, 2026

    • strip_bench

      Public
      Validation and performance datasets for brain etraction
      Python
      •0•0•0•0•Updated Jul 28, 2026Jul 28, 2026

    • moco_bench

      Public
      Motion correction
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jul 26, 2026Jul 26, 2026

    • EdgeReg

      Public
      Fast client-side medical image registration
      TypeScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jul 24, 2026Jul 24, 2026

    • niimath_gpl

      Public
      GPL components for niimath
      C
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jul 23, 2026Jul 23, 2026

    • niimath_tests

      Public
      Validation tests for niimath https://github.com/rordenlab/niimath
      TypeScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jul 12, 2026Jul 12, 2026

    • datalad-rs

      Public
      Keep code, data, containers under control with git and git-annex
      Rust
      •
      MIT License
      •0•0•0•0•Updated Jun 29, 2026Jun 29, 2026

    • bids-validator-rs

      Public
      Rust validator for the Brain Imaging Data Structure
      Rust
      •
      MIT License
      •1•0•0•0•Updated Jun 29, 2026Jun 29, 2026

    • dwi2trx

      Public
      Browser-only diffusion MRI pipeline: convert DICOMs, fit tensors, and track streamlines locally with WebGPU.
      TypeScript
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Jun 25, 2026Jun 25, 2026

    • SIAM

      Public
      Full head segmentation
      Python
      •
      Apache License 2.0
      •8•0•0•0•Updated May 19, 2026May 19, 2026

    • afni

      Public
      Official AFNI source and documentation
      C
      •
      Other
      •122•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • allineate-benchmark

      Public
      Benchmark for 3dAllineate optimizations
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • niivuegpu-demo

      Public
      WebGPU/WebGL2 backends
      0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • glb-loader

      Public
      GLTF glb loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •2•1•1•0•Updated Dec 13, 2025Dec 13, 2025

    • MRIcroGL

      Public
      v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
      visualizationlazarusopengl
      visualizationlazarusopenglglsldicomvolume-renderingniftibids-formatdicom-viewermricrogl
      Python
      •
      Other
      •38•291•2•1•Updated Nov 23, 2025Nov 23, 2025

    • niimath-bitmap

      Public
      Tutorial for volume to bitmap creation
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • nanojpeg

      Public
      a compact JPEG decoder
      C
      •
      MIT License
      •0•0•0•0•Updated Oct 13, 2025Oct 13, 2025

    • dcm_bench

      Public
      Python script to compare DICOM compression performance
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Oct 11, 2025Oct 11, 2025

    • itu-t81_issue

      Public
      Different interpretations for ITU-T81 compression
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • soop-dwi

      Public
      Curation and processing of diffusion images
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•1•0•1•Updated Jul 17, 2025Jul 17, 2025

    • soop-ct

      Public
      Stroke Outcome Optimization Project (SOOP) Computed Tomography scripts
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Jun 27, 2025Jun 27, 2025
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