Stars
Portable solution to generate genome alignment chains using lastz
The core collection of The Hiller Lab nextflow/wdl modules
LLM Council works together to answer your hardest questions
Snakemake pipeline to evaluate polymerase-amplified HiFi read sets
Fast DNA search and [host] depletion using minimizers
Burn is a next generation tensor library and Deep Learning Framework that doesn't compromise on flexibility, efficiency and portability.
A fast and ergonomic concurrent hashmap for read-heavy workloads.
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments
Training on CNN and basic ML for genomics
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
Tutorial on large language models for genomics
Rust numeric library with high performance and friendly syntax
R extension library for rust designed to be familiar to R users.
My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; Molecular Evolution; Genomic Data Science and Clustering; Fi…
Oxbow makes genomic data ready for high-performance analytics.
☄🌌️ The minimal, blazing-fast, and infinitely customizable prompt for any shell!
fastest GTF/GFF-to-BED converter chilling around
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
An open-access bioinformatics text
Applied Computational Genomics Course at UU: Spring 2020
A high-performance exon/CDS spliced transcriptome builder from fasta + GTF/GFF