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TOGA2 Public
Forked from hillerlab/TOGA2TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments
Python MIT License UpdatedJun 10, 2026 -
xasm Public
meta-assemble bulk RNAseq datasets at scale
Nextflow GNU General Public License v3.0 UpdatedJun 10, 2026 -
xloci Public
get sequences from 2bit/fa using bed/gtf/gff
Rust Apache License 2.0 UpdatedJun 9, 2026 -
xorf Public
comprehensive prediction of open-reading-frames
Rust GNU General Public License v3.0 UpdatedJun 8, 2026 -
fxsplit Public
split FASTX (and 2bit) into N chunks/files/headers
Rust Apache License 2.0 UpdatedJun 3, 2026 -
make_lastz_chains Public
Forked from hillerlab/make_lastz_chainsPortable solution to generate genome alignment chains using lastz
Python MIT License UpdatedMay 30, 2026 -
multi-package-containers Public
Forked from BioContainers/multi-package-containersTesting building mulled containers for multi-requirement tools.
UpdatedMay 30, 2026 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedApr 17, 2026 -
genomemask Public
mask specific regions of a genome in any format
Rust Apache License 2.0 UpdatedApr 15, 2026 -
packbed Public
pack a .bed into overlapping components
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gxf2bed Public
fastest GTF/GFF-to-BED converter chilling around
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bed2gtf Public
high-performance BED-to-GTF converter written in Rust
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gtfsort Public
a lexicographically-based GTF/GFF sorter
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postoga Public
The post-TOGA processing pipeline
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intronIC Public
Forked from glarue/intronICRetrieve annotated intron sequences and classify them as minor (U12-type) or major (U2-type) using a support vector-machine model.
Python GNU General Public License v3.0 UpdatedNov 26, 2025 -
prank-msa Public
Forked from ariloytynoja/prank-msaAutomatically exported from code.google.com/p/prank-msa
C++ UpdatedNov 24, 2025 -
beaver Public
Forked from Shao-Group/beaverC++ BSD 3-Clause "New" or "Revised" License UpdatedNov 21, 2025 -
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rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedOct 16, 2025 -
orfipy Public
Forked from Genereux-akotenou/orfipyFast and flexible ORF finder
Jupyter Notebook MIT License UpdatedSep 22, 2025 -
TOGA Public
Forked from hillerlab/TOGATOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…
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bed2gff Public
cool BED-to-GFF3 converter that runs in parallel
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