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1. shih-lab/magnets shih-lab/magnets Public

   Analysis code for Alamos & Waldburger et al. "Multiplexed profiling of transcriptional regulators in plant cells" Nature Biotechnology 2025

   Python 2

2. hierarchical_LLM_agents hierarchical_LLM_agents Public

   Simulating LLM agents in dynamic environments

   Python 2

3. genomic_MSA_transformer genomic_MSA_transformer Public

   DNA sequences in a multiple sequence alignment transformer

   Python 2

4. deep_RL_brain_lesions deep_RL_brain_lesions Public

   Deep reinforcement learning to localize brain lesions in MRI images

   Python 1

5. shih-lab/ADhunter shih-lab/ADhunter Public

   Python

6. structure structure Public

   Forked from bblonder/structure

   protein visualization screensaver

   Swift 2