protein visualization screensaver

Analysis code for "Binary vector copy number engineering improves Agrobacterium-mediated transformation" Nature Biotechnology 2024

Analysis code for "Active learning enables discovery of transcriptional activators across fungal evolutionary space"

DNA sequences in a multiple sequence alignment transformer

Simulating LLM agents in dynamic environments

Deep reinforcement learning to localize brain lesions in MRI images

Analysis code for Alamos & Waldburger et al. "Multiplexed profiling of transcriptional regulators in plant cells" Nature Biotechnology 2025

🛁 Clean Code concepts adapted for Python

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

A genome visualization python package for comparative genomics

DNA plotting library for Python

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

A tiling window manager for macOS based on binary space partitioning

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA

Metagenomic search for novel CRISPR-transposons

A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.

GOOSOS: Get ribOsOmal proteinS from prOtein faStas

Beginner's materials for learning OT-2 APIv2

This repository contains implementations and illustrative code to accompany DeepMind publications

Code and data products supporting Jaffe et al., 2021.

An analysis of antibiotic resistance in the infant gut microbiome using genome-resolved metagenomics data.

Gene cluster comparison figure generator

An all-atom protein structure dataset for machine learning.

Notes for UC Berkeley CompBio and BioE 131/231

A collective list of free APIs

No-Sweat™ Eslint and Prettier Setup - with or without VS Code

The source for https://gohugo.io/