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Oct 24, 2025 - JavaScript
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bigdataviewer
Here are 9 public repositories matching this topic...
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
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Aug 22, 2024 - Python
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
java imglib2 volume-rendering fiji-plugin 3d-volume utrecht-university bigdataviewer curve-tracing 3d-microscopy
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Sep 7, 2026 - Java
browsing large volumetric data and shapes
java imglib2 point-cloud meshes fiji-plugin 3d-volume utrecht-university bigdataviewer volumetric-rendering 3d-microscopy bigvolumeviewer
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Sep 23, 2026 - Java
Adaptive Particle Representation (APR) viewer based on BigDataViewer (BDV)
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Mar 1, 2019 - Java
making montage or combine tiff images of different sizes
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Aug 22, 2025 - Java
Blends SerialEM montages with IMOD and writes calibrated pyramidal OME-TIFF, plus BigDataViewer-compatible HDF5 and reduced-resolution derivatives for very large montages. GUI and standalone Windows executable.
python hdf5 electron-microscopy microscopy ome-tiff image-conversion imod bioimage-analysis bigdataviewer serialem
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Sep 21, 2026 - Python
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