hidivelab

A declarative interactive genomics visualization library for Python.

The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and …

Python API and Jupyter widget for Vitessce

Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

Configure Vitessce using existing Scverse plotting APIs

A utility script to manage local docker instances of HiGlass

Server component for HiGlass that manages and serves tiled data

Given a Frictionless Table Schema, generate an Excel template with input validation

HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

Automated evaluation with synthetic personas

Utils for loading HuBMAP data formats

Visualization of 3D genome models in notebooks

Python bindings to the esbuild Transform API

Registry for Visualization Tool Annotations that are compatible with Refinery (https://github.com/refinery-platform/refinery-platform)

A simple experiment to serve content of tabular files through a REST API with Django and pandas.

Creates a Docker image that can create tiles from OME-TIFF files

Python client for the Cells API

Python implementation of miQC: probablistic quality control of scRNA-seq data

Convert REFI-QDA .qdpx file into JSON and PNG files