PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
Automated omics-scale protein modeling and simulation setup.
A unified and modular interface to homology modelling software
GPCRs modeling and docking with python
An automated pipeline for homology-modeling based on modeller
A tool to model the evolution and structural impact of alternative splicing
Designed for batch submission of multiple target sequences using a single structural template in SwissModel
Software for performing Automatic Ligand-guided Backbone Ensemble Receptor Optimization with ICM
Structural Bioinformatics Course @UAM
Energy Evaluation of Single Mutant Homology Models
Comparative homology modelling of SARSCov2 NSP4 subregion using Modeller
A Python-based comparative modeling workflow using MODELLER to build homology models from a target FASTA and template PDB, with comparison against a Swiss-Model structure.
Homology Modelling of the human cryptochrome-1 using mouse cryptochrome-1
This repository contains an end-to-end, fully GUI/web-based dual-receptor molecular docking and ADMET profiling pipeline of four cyanobacterial natural products — scytonemin, phycocyanobilin, lyngbyabellin A and nostocarboline — against the BRCA2 DNA-binding domain using PyMOL, AutoDock Vina, PLIP, SwissADME, and ADMETlab 3.0.
Homology modeling of alpha-amylase using bioinformatics tools to predict 3D protein structure and analyze structural features.
Assess models previously generated with modeller with the DOPE method
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