LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein function.
VirBot: a protein-based RNA virus detector for metagenomic data
LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein function.
Phyrvm: A one-stop software solution for RNA virus mining and host-association prediction
Automated maximum-likelihood phylogeny pipeline for viral families. Discovers species via NCBI Taxonomy, downloads from GenBank, aligns with MAFFT, builds trees with FastTree (broad) and IQ-TREE (refined), and annotates internal nodes by LCA. Supports multi-marker concatenation for large DNA virus families.
Annotate and submit viral sequences to GenBank — GUI, Dockerized.
Analysis of nearly neutral mutational spectrum impact on protein evolution in RNA-viruses
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