Stars
BGC Detection and Classification Using Deep Learning
The Markdown-based note-taking app that doesn't suck.
Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data
📐 Compute distance between sequences. 30+ algorithms, pure python implementation, common interface, optional external libs usage.
Pipeline to compare secondary metabolite biosynthetic gene clusters (BGCs)
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
Send code and text to macOS and Linux Terminals, iTerm, ConEmu, Cmder, Tmux, Terminus; R (RStudio), Julia, IPython.
pix2code: Generating Code from a Graphical User Interface Screenshot
Variant calling and somatic mutation/CNV detection for next-generation sequencing data
A robust, extensible metagenomics pipeline
Stupid nyancat animation on your +$2k MacBook Pro's Touchbar
Automatic extraction of relevant features from time series:
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!
💌 Things I've learned about writing good READMEs.
A complete computer science study plan to become a software engineer.
Evolutionary and Functional Implications of Hypervariable Loci Within the Skin Virome
Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.
Implementation of various string similarity and distance algorithms: Levenshtein, Jaro-winkler, n-Gram, Q-Gram, Jaccard index, Longest Common Subsequence edit distance, cosine similarity ...
Extensions to MarkdownEditing for writing academic papers
Magic auto brightness based on screen contents 💡
MMseqs2: ultra fast and sensitive search and clustering suite
A benchmarks of genomic pipelines running in Docker containers