Stars
This is the official repository for our CVPR 2023 paper 'Task-Specific Fine-Tuning via Variational Information Bottleneck for Weakly-Supervised Pathology Whole Slide Image Classification'.
This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.
An open-source, customizable intermediate logic textbook
Official implementation of NRI from the paper "A Foundation Model for Zero-Shot Logical Rule Induction"
A motley crew of agents developed by the Monarch Initiative
A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification.
The agent harness performance optimization system. Skills, instincts, memory, security, and research-first development for Claude Code, Codex, Opencode, Cursor and beyond.
An OWL ontology and RDF knowledge graph of the top 100 IMDb movies, modeled in Protégé and stored in GraphDB. Demonstrates semantic modeling, data ingestion, and SPARQL querying.
A tool for generating embeddings of classes organized into an an ontology
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
KAUST Academy Artificial Intelligence Summer 2025
a tool for backing up your data using rsync (if you want to get help, use https://lists.sourceforge.net/lists/listinfo/rsnapshot-discuss)
21 Lessons, Get Started Building with Generative AI
Materials of Machine Learning course delivered by ML4BMR Unit @BSC
An information model for representing variant annotations.
A comprehensive Model Context Protocol (MCP) server providing advanced access to the ChEMBL chemical database.
Predictive Biomarker Modeling Framework (PBMF)
A terminology and data model for describing categorical variation concepts.
Official repository for the SENA-discrepancy-VAE model.
GA4GH Variation Representation Python Implementation
Extensible specification for representing and uniquely identifying biological sequence variation
Resources for the KG course at IDS, Maastricht University