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KaryoScope: rapid, alignment-free sequence annotation for the pangenome era
A tool for motif annotation and visualization in tandem repeats.
Tandem repeat database and analysis queries
π Awesome lists about all kinds of interesting topics
SIMD-accelerated distances, dot products, matrix ops, geospatial & geometric kernels for 16 numeric types β from 6-bit floats to 64-bit complex β across x86, Arm, RISC-V, and WASM, with bindings foβ¦
Wally: Visualization of aligned sequencing reads and contigs
A rust implementation of regioneR for interval overlap permutation testing
base-accurate DNA sequence alignments using WFA and mashmap3
π¦ Ξ» Overly-documented Rust-powered Lambda Calculus Interpreter.
Python wrapper for wavefront alignment using WFA2-lib
π¦π Rust library to compare strings (or any sequences). 25+ algorithms, pure Rust, common interface, Unicode support.
VIP cheatsheets for Stanford's CS 229 Machine Learning
π Guides, papers, lessons, notebooks and resources for prompt engineering, context engineering, RAG, and AI Agents.
Simple implementation of the a-star algorithm in Python π
Cleanlab's open-source library is the standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.
An Awesome List of projects using the pyproject.toml Python configuration file.
Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium. These files can be used as standard resource of BED files β¦
upload big files to Zenodo using cURL, jq and bash