NGSNGS: Next generation simulator for next generation sequencing data

Genotype likelihood simulator for VCF/BCF files

Small code for parsing annoying newick trees recursively

Site frequency spectrum estimation based on window expectation-maximisation algorithm

Program for analysing NGS data.

Software for predicting library complexity and genome coverage in high-throughput sequencing.

getliner

Tools (written in C using htslib) for manipulating next-generation sequencing data

PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive upd…