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Aboubakr-Ibrahim/README.md

Hi, I'm Aboubakr Ibrahim

Biomedical Engineer connecting Clinical Engineering, Medical Device Quality, and Healthcare Data

I am a Biomedical Engineering graduate from Işık University with documented internship experience in hospital clinical-engineering and X-ray technical-service environments in Egypt and Türkiye.

My work combines medical-equipment reliability, patient safety, quality systems, MATLAB development, biomedical signal processing, and responsible healthcare-data research.

Current focus

  • Building reproducible MATLAB portfolio projects from my academic and commissioned research work
  • Strengthening clinical-engineering, field-service, and medical-device quality expertise
  • Applying responsible data analysis and machine learning to healthcare research
  • Seeking entry-level and early-career opportunities in clinical engineering, field service, medical-device quality, technical applications, and biomedical research
  • Open to international relocation, subject to visa and work authorization

Core areas

Clinical engineering and medical equipment

  • Hospital equipment inspection, troubleshooting, preventive-maintenance support, and functional verification
  • Exposure to ventilators, patient monitors, defibrillators, anesthesia equipment, infusion pumps, ultrasound systems, CT equipment, operating tables, and dental equipment
  • X-ray and digital-radiography service workflows, including mobile X-ray and U-arm systems
  • Patient safety, technical documentation, and communication with engineering and clinical teams

Medical-device quality

  • ISO 13485:2016 Medical Device QMS Internal Auditor training
  • Medical-device quality assurance and electrical-safety training
  • QMS, auditing, CAPA, document control, risk assessment, FMEA, and HTA foundations
  • Equipment reliability, traceable documentation, and responsible technical practice

Biomedical data and MATLAB

  • MATLAB programming and reproducible research workflows
  • Biomedical signal processing: ECG, HRV, QRS detection, STFT, and wavelets
  • Healthcare-data preparation, model evaluation, and leakage-aware experimental design
  • Honest reporting of methodological limitations and verification status

Selected projects

Project What it demonstrates Verification status
Early Sepsis Risk Detection MATLAB, MIMIC-III Demo, patient-level validation, logistic regression, random forest, responsible clinical-ML documentation Refactored; MATLAB execution and output review pending
QRS Detection Algorithm Comparison Pan-Tompkins-style and wavelet QRS detection, annotation matching, evaluation, and visualization Framework complete; benchmark execution pending
ECG & HRV Analysis Toolkit ECG preprocessing, R-peak detection, time/frequency-domain HRV, Poincare analysis, and batch reporting Static review complete; MATLAB tests pending
CNN-STFT Audio Denoising Leakage-aware experimental design, STFT/ISTFT, CNN mask estimation, baselines, and signal-quality metrics V2 static review complete; MATLAB execution and output review pending
ICU Mortality Modeling Prototype 24-hour prediction design, patient-level separation, training-only preprocessing, interpretable baselines, and calibration V2 static review complete; audited cohort execution pending

These repositories are educational and research portfolio projects. They are not medical devices and must not be used for diagnosis, monitoring, treatment, alarms, or patient-care decisions.

Documented engineering experience

Cairo University Hospitals, Egypt

Hospital-based biomedical engineering internship across ICU, CCU, emergency, operating-room, and imaging environments. Supported supervised inspection, troubleshooting, maintenance, and functional checks involving critical-care, imaging, and general hospital equipment.

EKOL Tıbbi Ürünler A.Ş., Türkiye

Biomedical engineering internship focused on X-ray and digital-radiography systems, hospital service visits, technical fault investigation, calibration support, component replacement, equipment reassembly, service documentation, and spare-parts workflows.

Selected training

  • ISO 13485:2016 Medical Device QMS Internal Auditor Training — Işık University
  • Medical Device Quality Assurance pathways — Fluke Biomedical
  • Electrical-safety and medical-equipment test-system training — Fluke Biomedical
  • Medical Device Quality Management and Auditing — Scilife Academy
  • WHO HEARTS Technical Package — World Health Organization
  • McKinsey.org Forward Program
  • Healthcare data, FHIR, and Azure Health Data Services learning — Microsoft Learn

Tools and working knowledge

MATLAB Signal Processing Machine Learning Healthcare Data Clinical Engineering Medical Equipment Medical Device Quality ISO 13485 FMEA QMS Technical Documentation

Languages

  • Arabic — Native
  • English — Professional working proficiency
  • Turkish — Basic and improving

Connect with me

I welcome conversations about biomedical engineering, clinical equipment, medical-device quality, MATLAB, biomedical signals, healthcare data, research collaboration, and suitable professional opportunities.

Pinned Loading

  1. early-sepsis-risk-detection early-sepsis-risk-detection Public

    Leakage-aware MATLAB framework for early sepsis risk research using MIMIC-III Demo and patient-level validation

    MATLAB

  2. ecg-hrv-analysis-toolkit ecg-hrv-analysis-toolkit Public

    MATLAB ECG and HRV toolkit with artifact-aware interval handling, time/frequency metrics and Poincaré analysis

    MATLAB

  3. qrs-detection-algorithm-comparison qrs-detection-algorithm-comparison Public

    MATLAB comparison of Pan–Tompkins-style and wavelet QRS detection with reproducible annotation-based evaluation

    MATLAB

  4. cnn-stft-audio-denoising cnn-stft-audio-denoising Public

    Leakage-aware MATLAB CNN–STFT audio-denoising framework with held-out evaluation and baseline comparison

    MATLAB

  5. icu-mortality-modeling-prototype icu-mortality-modeling-prototype Public

    24-hour ICU mortality research framework with patient-level splits, interpretable baselines and calibration

    MATLAB