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LLM-based ontological extraction tools, including SPIRES

Jupyter Notebook 905 116 Updated Apr 7, 2026

The lean application framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and a web browser.

Python 36,311 1,225 Updated May 27, 2026

Python tool to monitor RSS feeds and download the linked content.

Python 15 Updated Sep 4, 2017

Machine learning-based approach for the inference of gene regulatory networks from expression data.

C 102 38 Updated Sep 24, 2021

Examples for working with and extending Stardog

JavaScript 85 47 Updated Jun 9, 2026

KnetMaps: a BioJS component to visualize biological knowledge networks

JavaScript 10 6 Updated Apr 14, 2025

Scala GraphQL implementation

Scala 1,960 218 Updated May 17, 2026

For BioHackathon Europe 2021.

Python 30 42 Updated Nov 18, 2022

The source for the Linux kernel used in Windows Subsystem for Linux 2 (WSL2)

C 10,458 1,417 Updated Jun 19, 2026

🚀 Open source tools for GraphQL. Central repo for discussion.

JavaScript 2,600 412 Updated Apr 14, 2023

The industry-leading GraphQL client for TypeScript, JavaScript, React, Vue, Angular, and more. Apollo Client delivers powerful caching, intuitive APIs, and comprehensive developer tools to accelera…

TypeScript 19,807 2,698 Updated Jun 17, 2026

🌍  Spec-compliant and production ready JavaScript GraphQL server that lets you develop in a schema-first way. Built for Express, Connect, Hapi, Koa, and more.

TypeScript 13,945 2,004 Updated Jun 18, 2026

Low RAM Knowledge Graphs for Knetminer

Java 2 Updated Sep 10, 2021

Schema and generated objects for biolink data model and upper ontology

Python 245 88 Updated Jun 17, 2026

Python wordcloud example for knetminer viz

Python 1 1 Updated Jul 28, 2020

Documentation for the COVID-19 KnetGraph SPARQL and Cypher endpoints

Python 2 Updated Oct 14, 2021

Rebuild of AskOmics

Python 14 5 Updated Jun 19, 2026

COVID-19 Biohackathon April 5-11 2020

240 31 Updated May 28, 2020

Parent POM for Knetminer projects, also containing common files.

Shell 2 Updated Mar 27, 2026

Suite of tools for deploying and training deep learning models using the JVM. Highlights include model import for keras, tensorflow, and onnx/pytorch, a modular and tiny c++ library for running mat…

Java 14,235 3,837 Updated Jun 18, 2026

NLP framework for JVM languages.

Java 154 32 Updated Apr 26, 2021

jBox is a jQuery plugin that makes it easy to create customizable tooltips, modal windows, image galleries and more.

JavaScript 1,399 271 Updated Dec 27, 2025

A CX to Cytoscape JS library

JavaScript 3 Updated Mar 2, 2023

Knetminer-customised version of LODEStar

JavaScript 1 Updated Oct 16, 2023

Issue tracker, technical wiki, and example markup

HTML 63 55 Updated Jun 10, 2026

The Bio Knowledge Network, powering knowledge graphs released by the Knetminer project

XSLT 4 Updated May 25, 2023

The Cytoscape.js blog, using Github pages and Jekyll

JavaScript 18 47 Updated Jul 29, 2025

Schema.org - schemas and supporting software

HTML 6,123 933 Updated Jun 18, 2026

A clone of the Knetminer wiki to develop and test docs into a separated branch

1 2 Updated Aug 13, 2019

FASTQ sequence quality visualisation with Emoji

Python 174 19 Updated Dec 29, 2025
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