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slides Public
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latex-cv Public
A LaTeX CV with minor tweaks to moderncv template
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ggfree Public
ggplot2-style plots with base R graphics
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dynamics-evolution-indico Public
Indico customization files for dynamicsevolution.org
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sc2rf Public
Forked from lenaschimmel/sc2rfSARS-Cov-2 Recombinant Finder for fasta sequences
Python MIT License UpdatedApr 10, 2022 -
pangolin Public
Forked from cov-lineages/pangolinSoftware package for assigning SARS-CoV-2 genome sequences to global lineages.
Python GNU General Public License v3.0 UpdatedMay 20, 2021 -
BelleJS Public
Generate BEAST XML analysis files using a BEAUTI-like JavaScript interface
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pixelcraft Public
JavaScript code for converting video game sprite PNGs to cross-stitch patterns
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gotoh2 Public
Lightweight and customizable Python/C extension for pairwise alignment of genetic sequences using the Gotoh algorithm
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iupmBayes Public
Bayesian estimation of infectious units per million (IUPM) from viral outgrowth assay-based sequence data
R GNU Affero General Public License v3.0 UpdatedJun 25, 2020 -
BioID Public
Source files for online resources of Bioinformatics of Infectious Diseases course
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Covid19Canada Public
Forked from ccodwg/Covid19CanadaEpidemiological Data from the COVID-19 Outbreak in Canada
UpdatedMar 31, 2020 -
spacewar-js Public
JavaScript implementation of the DOS game SpaceWar
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netabc Public
Forked from rmcclosk/netabcFitting contact network models to phylogenies with kernel-ABC
C GNU General Public License v3.0 UpdatedApr 29, 2019 -
Creative-Commons-Markdown Public
Forked from idleberg/Creative-Commons-MarkdownMarkdown-formatted Creative Commons licenses
UpdatedNov 14, 2018 -
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preprints Public
Public access to TeX, scripts and data for manuscripts in preparation
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kamphir Public
Phylogenetic inference using a tree-shape kernel in an Approximate Bayesian Computation framework
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phydynR Public
Forked from emvolz-phylodynamics/phydynRR GNU General Public License v3.0 UpdatedApr 5, 2016 -
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mathsheets.js Public
A simple JavaScript/HTML5 web applet for generating basic math exercise sheets
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sealign Public
SeALign is an attempt to port Andrew Rambaut's Se-Al alignment editor to HTML5 Canvas and Javascript
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makebst Public
A small web script (JS and PHP) for interfacing with Patrick Daly's custom-bib package for customizing LaTeX bibliography styles
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TreeShapeKernel Public
A kernel function for comparing the shapes of phylogenetic trees.
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HyPhy: Hypothesis testing using Phylogenies
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