Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them

An opinionated view of the Tidyverse "dialect" of the R language.

Methods for the analyses described in Moody et al. 2024 (https://www.nature.com/articles/s41559-024-02461-1)

Genetic taxonomy of influenza A virus subtypes

Flu clade and mutation frequencies

An open-source re-implementation of the RDP4 recombination detection program

SARS-Cov-2 Recombinant Finder for fasta sequences

Rapid analysis and visualization of coronavirus genome variation

Epidemiological Data from the COVID-19 Epidemic in Canada

Alignment viewer for linux terminal

Interactive Visualization of Needleman-Wunsch Algorithm in Javascript

Reveal.js with dynamic d3.js graphs

Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C

Coalescent simulation and likelihood for phylodynamic inference

Phylogenetic inference using a tree-shape kernel in an Approximate Bayesian Computation framework

Archival and automation of bioinformatic pipelines and data

HyPhy: Hypothesis testing using Phylogenies

HyPhy: Hypothesis testing using Phylogenies