🗜 💻 A crash course on Data Compression.

All The Bacteria CLI — query 3.2M bacterial genomes (AMR, MLST, assemblies, metadata) from the terminal

A command-line benchmarking tool

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

From the article "Spaceflight alters host-gut microbiota interactions"

Tools for analyzing trees

Generate and combine genome assembly stats and taxonomy info. Internally used with GeneLab.

Portable database of microhaplotype marker and allele frequency data

3D modeles for settlers of Mars board game

A user-friendly workflow for phylogenomics

Site to help biologists wade their way into bioinformatics.

App for fast NMDS plots

Bioinformatics Tools

Spacecraft Associated Genome Analysis (SAGAn) workshop at NASA JPL

Bioinformatics program inStrain

Google Drive CLI Client

Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA

Rapid comparison and dereplication of genomes

ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes

STAMPS 2018 course

Using R with Jupyter / RStudio on Binder

Download files from NCBI Entrez by accession

Scripts to download genomes from the NCBI FTP servers

Web content for Meren Lab

An analysis and visualization platform for 'omics data