This package contains deep learning models and related scripts for RoseTTAFold

An analysis of PBMC single-cell data from myasthenic crisis patients (10x).

pipeline for BCRseq analysis in single cell data

Repository for ENACT pipeline for end-to-end analysis of Visium HD data

A Nextflow workflow for HLA typing using HLA-HD

R package implementation of Milo for testing for differential abundance in KNN graphs

rapids-singlecell: GPU-accelerated framework for scRNA analysis

collecting books, papers and docs.

Protein Identification with Deep Learning

TCR and BCR assembly from RNA-seq data

Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data

Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data

Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines

Automated Docker builds for bcbio

single cell recurrence based variant analysis

SNV calling from single cell sequencing

Convert 10x BAM files to the original FASTQs compatible with 10x pipelines

Workflow: Convert CONTROL-freec output to GISTIC2

single cell Flux Estimation Analysis (scFEA)

Framework for analysis of cell-types and Ligand-Receptor cooccurrences