Unsupervised Attributed Multiplex Network Embedding (AAAI 2020)

Application to assign secondary structure to proteins

Allosteric Protein-protein interaction Pocket Likelihood Evaluation System

A pipeline for the construction and multilayer motif analysis of temporal fMRI brain networks

The original library for analyzing multilayer networks.

multiNetX is a python package for the manipulation and visualization of multilayer networks. It is build on NetworkX

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

EGFI: Drug-Drug Interaction Extraction and Generation with Fusion of Enriched Entity and Sentence Information

Official Code Repository for the paper "Accurate Learning of Graph Representations with Graph Multiset Pooling" (ICLR 2021)

Bayesian optimisation & Reinforcement Learning library developed by Huawei Noah's Ark Lab

Implementation of the paper Deep Graph-level Anomaly Detection by Glocal Knowledge Distillation(WSDM22)

Baselines for anchor link prediction (including MNA, PALE, IONE, FINAL, FRUI-P, CROSSMNA, REGAL, HYDRA, STUL)

Source Code for IJCAI 2018 paper "Scalable Multiplex Network Embedding"

A general approach for multilayer network data clustering

Network Embedding framework in Multiplex Networks

Official implementation of NeurIPS'21 paper"Motif-based Graph Self-Supervised Learning for Molecular Property Prediction"

Predicting potential drug-drug interactions.

HyperAttentionDTI: improving drug–protein interaction prediction by sequence-based deep learning with attention mechanism. This repository contains the source code and the data.

NEtwork-based CAncer gene RElationship prediciton

HPODNets: deep graph convolutional networks for predicting human protein-phenotype associations

This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Multifaceted Protein-Protein Interaction Prediction Based on S…

A convolutional neural network to predict PPI interactions

Interpretable protein-protein interaction prediction based on sparse gated sequence encoder

Implementation of Graph Convolutional Networks in TensorFlow