Commits

History for

Commits on Feb 18, 2015

removed space at the end of each header in Minia results
rchikhi
committed
39ce4b2

Commits on Feb 10, 2015

renamed some of Minia traversal stats debug messages for better clarity
Rayan
committed
9d64a06

Commits on Jan 26, 2015

clarified minia cmdline
rchikhi
committed
8516c85

Commits on Jan 22, 2015

Update due to gatb-core changes
edrezen
committed
59c0617

Commits on Jan 20, 2015

emphf enabled by default in minia. also an attempt to compiel statically, not sure if it worked
rchikhi
committed
c0cff62

Commits on Jan 19, 2015

Adaptation to new OptionsParser class
edrezen
committed
3e6279f

Commits on Jan 8, 2015

cosmit
edrezen
committed
6f599fb
1) cosmit 2) add an option for setting the number of nucl per line in
edrezen
committed
7f27d1f

Commits on Dec 7, 2014

minor minia output file naming change
rchikhi
committed
0ddcbd3
Minia can now assemble reads directly, no need to call dbgh5
rchikhi
committed
6f1c795

Commits on Nov 10, 2014

previous commit was buggy, fixed now
WG2 hackathon
committed
358e432
added possibility to return simple paths shorter than 2k in minia
WG2 hackathon
committed
99f2e99

Commits on Aug 6, 2014

minor print fix in minia
Rayan Chikhi
committed
a34d41a

Commits on Aug 4, 2014

removed Utils.cpp from minia as needleman_wunch is already in GATB-Core now
Rayan Chikhi
committed
af53f44

Commits on May 21, 2014

Remove includes for Traversal and Frontline (now in GATB-CORE)
edrezen
committed
796c935
remove files
edrezen
committed
92ad3fd
Remove includes for Traversal and Frontline (now in GATB-CORE)
edrezen
committed
2c17356

Commits on Apr 1, 2014

gatb-core API change
edrezen
committed
af79eee

Commits on Mar 3, 2014

License information
edrezen
committed
ef2b6cd

Commits on Feb 27, 2014

max memory management
edrezen
committed
74ee662
Use Graph object directly for simple path stuff (don't use GraphHelpers
edrezen
committed
6899d04
cosmit
edrezen
committed
33e0066

Commits on Feb 25, 2014

ported changes from Minia-SVN (up to rev 6250) to Minia-GATB
Rayan Chikhi
committed
b8c7e87

Commits on Jan 14, 2014

Modify headers of *.hpp and *.cpp => Affero GPL
edrezen
committed
e133494

Commits on Jan 13, 2014

Update due to API changes in gatb-core
edrezen
committed
58b806d

Commits on Dec 3, 2013

Use Path structure
edrezen
committed
44fa91c
Use Path structure
edrezen
committed
d1081c1
Use Path structure
edrezen
committed
f8d9116
Use Path structure
edrezen
committed
1617bfa

Commits on Nov 29, 2013

First full working (hope so) version of Minia-gatb
edrezen
committed
075edc1

Commits on Nov 22, 2013

cosmit
edrezen
committed
947519c
Working version
edrezen
committed
75998a9
Add getters
edrezen
committed
8aaef8d
Use Terminator::isEnabled + cosmit
edrezen
committed
5f0c106
Use NodeSelector directly (no more through Traversal class) for getting
edrezen
committed
0d719f7