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Python tool for converting files and office documents to Markdown.

Python 174,731 12,774 Updated Aug 19, 2026

A hyperparameter optimization framework

Python 14,674 1,378 Updated Aug 19, 2026

Use ripgrep to find TODO tags and display the results in a tree view

JavaScript 1,813 188 Updated Apr 13, 2024

Python bindings for CppAD and CppADCodeGen using Boost.Python

C++ 25 9 Updated Jun 10, 2026

Mixed-effects models in R using S4 classes and methods with RcppEigen

HTML 694 161 Updated Aug 19, 2026

A simplified python interface to COPASI.

Python 28 5 Updated Jun 15, 2026

Core functionalities of the Open Systems Pharmacology Suite

C# 6 8 Updated Aug 19, 2026

XML Schema validator and data conversion library for Python

Python 477 83 Updated Jun 30, 2026

Qiskit is an open-source SDK for working with quantum computers at the level of extended quantum circuits, operators, and primitives.

Python 7,721 3,014 Updated Aug 19, 2026

QuTiP: Quantum Toolbox in Python

Python 2,056 778 Updated Aug 20, 2026

Productive, portable, and performant GPU programming in Python.

C++ 28,333 2,386 Updated Jul 6, 2026

AI Agents for drug discovery, drug development, and other pharmaceutical R&D

Python 97 48 Updated Mar 30, 2026

Shapley effects for Sensitivity Analysis of Model Output

Python 3 Updated Jun 27, 2022

Robust, Fast, and Parallel Global Sensitivity Analysis (GSA) in Julia

Julia 65 27 Updated Aug 14, 2026

Software and data related to the paper "Shapley effects estimation in reliability-oriented sensitivity analysis with dependent inputs by importance sampling"

Python 6 Updated Feb 13, 2026

GPU-acceleration routines for DifferentialEquations.jl and the broader SciML scientific machine learning ecosystem

Julia 325 41 Updated Aug 18, 2026

Probabilistic modelling and uncertainty quantification library

C++ 343 110 Updated Aug 3, 2026

DMS of the Omicron BA.1 and BA.2 RBDs

Jupyter Notebook 7 1 Updated Apr 25, 2023

PK/PD course

Jupyter Notebook 2 Updated Jun 27, 2025

Wasm powered Jupyter running in the browser đź’ˇ

TypeScript 4,877 445 Updated Aug 19, 2026

CPM implementation in pure JavaScript

JavaScript 40 19 Updated Jul 13, 2026

A game theoretic approach to explain the output of any machine learning model.

Jupyter Notebook 25,693 3,740 Updated Aug 11, 2026

OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epidemic

Python 130 76 Updated Oct 9, 2025

An extremely fast Python package and project manager, written in Rust.

Rust 88,896 3,501 Updated Aug 20, 2026

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

Python 145 78 Updated Jul 19, 2022

a unified framework for modeling chemically reactive systems

C++ 216 73 Updated Feb 2, 2026

A Level I simulation is designed to model the repartition of a chemical component on different environmental mediums in a simple first-step way. Level 1 model for research and environmental Chemist…

Jupyter Notebook 7 Updated Apr 12, 2024

UQpy (Uncertainty Quantification with python) is a general purpose Python toolbox for modeling uncertainty in physical and mathematical systems.

Python 362 100 Updated Jun 2, 2026

Flexible and efficient tools for high-dimensional approximation, scientific machine learning and uncertainty quantification.

Python 76 16 Updated Aug 11, 2026
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