On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

Xron - an omni basecaller for ONT reads.

The first large protein language model trained follows structure instructions.

a minimal, scriptable genome browser for python

PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity

The detection of peaks and valleys in a 1d-vector or 2d-array (image)

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

💥 Quickly calculate and visualize sequence coverage in alignment files

Detection and genotyping of structural variants

Comparison of tools for the identification of structural variations in microbial genomes

NCBI Prokaryotic Genome Annotation Pipeline

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

Variant-aware CRISPR off-target nomination

2 ~ 6 sets venn diagram for python

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

do multiple nucleotide sequence alignment fast and accurately

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.

OmegaFold Release Code

Remote protein homology detection suite.

CRISPR discovery pipeline

Official release of the ProGen models

Analysis pipeline for the GUIDE-seq assay.

🧬 Efficient parallelized peta-scale protein database search

a guideRNA database generation tool