Animation engine for explanatory math videos

🤖 A production-grade framework for building AI-powered applications in R.

Vim plugin to work with R

Integrative Composable Visualization Framework for ggplot2

Genome browser and variant annotation

Multi-sample multi-group scRNA-seq analysis tools

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

Generate masks for scRNA-seq clusters on t-SNE or UMAP plots

Qwen3 is the large language model series developed by Qwen team, Alibaba Cloud.

rapids-singlecell: GPU-accelerated framework for scRNA analysis

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

VIP cheatsheets for Stanford's CS 229 Machine Learning

SNV calling from single cell sequencing

The "copynumber" R package with support for hg38

Efficient and precise single-cell reference atlas mapping with Symphony

Night theme for Zotero UI and PDF

simpler single cell RNAseq data clustering

Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)

Differential expression analysis for single-cell RNA-seq data.

A somatic SNV caller using CNV info

A simulation program

Count bases in BAM/CRAM files

A tool to call somatic single nucleotide variants.