JiaoLab2021

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1. EVG EVG Public

   A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads

   C++ 52

2. varigraph varigraph Public

   An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes

   C++ 48 1

3. SynDiv SynDiv Public

   A tool for quick and accurate calculation of syntenic diversity.

   C++ 45

4. PHap PHap Public

   A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common sequencing data including long-reads and Hi-C.

   Python 30 2

5. panCG panCG Public

   An integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences.

   Python 22 1

6. HapGene HapGene Public

   An annotation pipeline for haplotype-resolved gene annotation in heterozygous diploid genomes.

   Python 10