reviewer3 is a command line tool that uses LLMs to give constructive feedback about scientific `.docx` manuscripts.

Turn any agent into a life science expert with NVIDIA BioNeMo skills.

Source code and examples for searching structures using RANGE

A project scaffold generator for bioinformatics analysis

An epithelium simulation library

BioEngine is a distributed AI platform that brings the power of cloud computing to bioimage analysis.

Software that can generate photos from paintings, turn horses into zebras, perform style transfer, and more.

Implementation of "GANs for Biological Image Synthesis"

STED simulation platform written in Python

Napari plugin to ease manual correction of epithelial movie segmentation

A differentiable JAX-based framework for vertex modeling and inverse design of epithelial tissues

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks

TrackMate is your buddy for your everyday tracking.

ngio is a Python library to streamline OME-Zarr image analysis workflows.

Reference implementation of the Graph Exchange File Format

Napari plugin to run 3D vertex model

A template repo used to make new napari plugins

Utilities for computing common accuracy metrics on cell tracking solutions with ground truth

A simple automated feedback microscopy tool for live tracking of moving samples.

Poetry plugin that updates dependencies and bumps their versions in pyproject.toml file

CHIC (Communication Human Imagination Creativity) Advertising

Single cell resolution 3D imaging and segmentation within intact live tissues

Software for Caenorhabditis elegans length determination

Public repo for rbio, a biologically-informed reasoning model trained on virtual cell models as verifiers