A modern LaTeX sanitization tool for arXiv submissions. Strips unused files, comments, conditionals, and metadata while preserving the same output pdf.

Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders

Data visualisation web components for the life sciences.

MMseqs2: ultra fast and sensitive search and clustering suite

Protein (language model) Benchmarking Collection - PBC

Official git repository for Biopython (originally converted from CVS)

Transmembrane proteins predicted through Language Model embeddings

A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.

ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure prediction, prediction of mutational effects to protein ligand i…

Administration platform for Community Supported Agriculture groups

farmOS: A web-based farm record keeping application.

Biological prediction models made simple.

Python framework for interpretable protein prediction

Backend library for conversational AI in biomedicine

TMvisDB provides per-residue transmembrane topology annotations for all proteins in AlphaFold DB (~ 200 million proteins, September '22) predicted as transmembrane proteins (~ 46 million).

Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction

Bayesian Optimization and Design of Experiments

🦉 Data Versioning and ML Experiments

A unifying framework for biomedical research knowledge graphs

Rust bindings for the Python interpreter

TED: Automated Domain Parsing of AlphaFold DB

Course material for the Microbiology of Extreme Environments class at the University of Naples Federico II