Stars
Code used to generate the figures for our 2021 manuscript on LR-Split-seq.
A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
A Bioconductor R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging probabilistic models.
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Extract matched substrings using a pattern, similar to what package glue does in reverse
List of common stop words in various languages.
Collection of bioinformatics training materials
Visualize and annotate genomic coverage with ggplot2
ChIP-seq analysis notes from Ming Tang
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network out…
GpC methylation from fast5:s to reference anchored calls
cpp11 helps you to interact with R objects using C++ code.
Template for building a bioconductor workshop package using github actions
Benchmarking programming languages/implementations for common tasks in Bioinformatics
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
An extension for VS Code that visualizes data during debugging.
Command-line interface description language for R (http://docopt.org)