Stars
A faster loader for multiprocess random access to FASTA files.
Automates metadata extraction and completion based on LLMs.
A Distributed Attention Towards Linear Scalability for Ultra-Long Context, Heterogeneous Data Training
A C++ drop-in replacement of FastQC to assess the quality of sequence read data
CTRAIN is a unified, modular and comprehensive package for certifiably training neural networks and evaluating their robustness.
Fast static image export for web-based visualization libraries
Fast and memory-efficient exact attention
Fast genome and metagenome distance estimation using MinHash
Species-aware DNA language models capture regulatory elements and their evolution
Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements
Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.
Implementation of influxdata line protocol format in python
Open source web interface for Slurm HPC & AI clusters
SMAC3: A Versatile Bayesian Optimization Package for Hyperparameter Optimization
Development repository for the Triton language and compiler
Transfer learning for Mutation Effect Prediction
Official repository for the ProteinGym benchmarks
Excalidraw for Visual Studio Code
Collection of easyblocks that implement support for building and installing software with EasyBuild.
EasyBuild is a software installation framework in Python that allows you to install software in a structured and robust way.
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
A tool based on Excalidraw to create stop motion animations and slides.