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@gagneurlab

Gagneur lab

To understand the genetic basis of gene regulation and its implication in diseases.

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  1. drop drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 161 55

  2. OUTRIDER OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 56 13

  3. scooby scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    Python 55 8

  4. FRASER FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 53 24

  5. absplice absplice Public

    Python 39 4

  6. AbExp AbExp Public

    Python 8 1

Repositories

Showing 10 of 58 repositories
  • NMD-Scanner Public
    gagneurlab/NMD-Scanner’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Feb 11, 2026
  • FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    gagneurlab/FRASER’s past year of commit activity
    R 53 24 25 1 Updated Feb 11, 2026
  • OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    gagneurlab/OUTRIDER’s past year of commit activity
    R 56 13 13 0 Updated Feb 11, 2026
  • PROTRIDER Public
    gagneurlab/PROTRIDER’s past year of commit activity
    Python 5 4 1 0 Updated Feb 9, 2026
  • pyDataViz Public

    Python version of the DataViz script

    gagneurlab/pyDataViz’s past year of commit activity
    JavaScript 1 0 1 0 Updated Feb 5, 2026
  • AbExp Public
    gagneurlab/AbExp’s past year of commit activity
    Python 8 MIT 1 0 0 Updated Jan 27, 2026
  • drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    gagneurlab/drop’s past year of commit activity
    Python 161 MIT 55 40 3 Updated Dec 24, 2025
  • Modanovo Public
    gagneurlab/Modanovo’s past year of commit activity
    Python 2 Apache-2.0 1 0 0 Updated Dec 4, 2025
  • scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    gagneurlab/scooby’s past year of commit activity
    Python 55 MIT 8 3 2 Updated Nov 1, 2025
  • absplice2 Public
    gagneurlab/absplice2’s past year of commit activity
    Python 2 GPL-3.0 0 1 0 Updated Oct 13, 2025

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