Turn any codebase, with its docs, SQL schemas, configs, and PDFs, into a queryable knowledge graph. A /graphify skill for Claude Code, Cursor, Codex, and Gemini CLI: local deterministic AST parsing…

"ltc_palettes: Tailored for data visualization enthusiasts, ltc_palettes is an R package that offers a curated collection of color palettes. Crafted to enhance clarity and impact, these palettes en…

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Tools for handling Unique Molecular Identifiers in NGS data sets

UniProt REST API R wrapper

This is the development home of the Snakemake wrapper repository, see

The Fast Cross-Platform Package Manager

R package to create cell pictures.

This package contains deep learning models and related scripts for RoseTTAFold

Merge of ioquake3 features and fixes into RTCW code bases

iDemux is an all-in-one command line tool that can be used for both demultiplexing and error correction of FASTQ files. It enables demultiplexing of i1 inline barcodes of Lexogen’s QuantSeq-Pool as…

Python BK-tree data structure to allow fast querying of "close" matches

A Grammar of Data Manipulation for Omics Data

Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication

Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps

Various teaching material