Statistical Rethinking course and book package

A Framework for Building Robust Shiny Apps

Tidy data structures, summaries, and visualisations for missing data

Fast, sensitive and accurate integration of single-cell data with Harmony

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

Reproducible Data Science environments for R with Nix

Color palette package inspired by National Parks

A logging package in R similar to log4j

Count Regression for Correlated Observations with the Beta-binomial

Prediction Performance Metrics

Genomic coordinates of problematic genomic regions as GRanges

Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRanges), or set of control ranges that are matched across one …

Modelling DNA methylation profiles

It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space of the original columns. This results in a full rank matrix t…

Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.

An R package for analyzing UMI-4C chromatin contact data.