Stars
Julia package for performing Bloch simulations within the context of Magnetic Resonance Imaging
The original bloch equation simulator was a Matlab mex file created by Brian Hargreaves at Stanford University. This modification to run it as a Python C extension
Contains pulseq definitions for T1 (VFA GRE), T2 (MESE) mapping sequences.
Plots streamlines, streaklines and pathlines
MATLAB function and script to plot flowlines (streamline, pathline, streakline) of a steady/unsteady flow vector field.
This is the official code for the paper "Transformer Based Feature Fusion for Left Ventricle Segmentation in 4D Flow MRI" MICCAI 2022, Singapore
This repository provides Matlab codes to recover accelerated phase contrast MRI data using ReVEAL. Codes are provided to recover planar images with 1-3 velocity endoding dimensions, and 4D flow dat…
This repository is pytorch's implement of paper: WSSNet: Aortic wall shear stress estimation using deep learning on 4D Flow MRI
Super Resolution 4D Flow MRI using Residual Neural Network
source code to enhance the blood flow measurements and the hemodynamic analysis with 4D flow MRI in cerebral aneurysms using multi-modality data and sparse representation
Compute transvalvular flow from 4D flow MRI data of the heart
fetal whole heart 4D flow cine MRI using multiple non-coplanar balanced SSFP stacks
4DFlowMRI _Segmentation is a repository containing deep learning models for 3D and 4D segmentation from 4D flow MRI. In particular, the segmentation of the aorta artery is addressed.
Code for "Volumetric Segmentation-Free Method for Rapid Visualization of Vascular Wall Shear Stress Using 4D Flow MRI "
Segmentation tool for 4d flow MRI images
This tool creates an anatomical 'atlas' of 3D segmented MRI data from 4D flow MRI datasets. For more information please see "van Ooij P, et al. A methodology to detect abnormal relative wall shear …
Deep neural network for aortic wall shear stress estimation from 4D Flow MRI
This code is used to automatically segment the left and right ventricles on bSSFP cardiac MRI. The aim of my project is to use these ventricle segmentations to measure kinetic energy and other hemo…
Scripts to recreate analysis performed for research paper entitled "A Phantom Study Comparing Radial Trajectories for Accelerated Cardiac 4D Flow MRI against a Particle Imaging Velocimetry Reference"
a Matlab-based 4D flow MRI tool for measuring pulse wave velocity in the aorta
Wall shear stress (WSS) calculation for 4D Flow MRI
A collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.
ISBI 2023 - A Registration- and Uncertainty-based Framework for White Matter Tract Segmentation with Only One Annotated Subject
Code of Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation.