A curated list of scientific image analysis resources and software tools.

nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new stan…

A little word cloud generator in Python

Next-gen fast plotting library running on WGPU using the pygfx rendering engine

Light microscopy simulation in python.

⚡ Better `pre-commit`, re-engineered in Rust

State-of-the-art Image & Video CLIP, Multimodal Large Language Models, and More!

napari: a fast, interactive, multi-dimensional image viewer for python

[CVPR 2024] Deformable Convolution v4

Deformable Convolution Networks v4

Deformable Convolutional Networks

PyTorch version of Stable Baselines, reliable implementations of reinforcement learning algorithms.

Interactive Pytorch forward pass visualization in notebooks

Framework agnostic sliced/tiled inference + interactive ui + error analysis plots

Image reading, metadata management, and image writing for Microscopy images in Python

Python Image Sequence: Load video and sequential images in many formats with a simple, consistent interface.

Read and write TIFF files.

Install PyTorch distributions with computation backend auto-detection

Shiny for Python

cuML - RAPIDS Machine Learning Library

A minimal Zarr image viewer based on Viv.

A concise API for exploratory data visualization implementing a layered grammar of graphics

Open-source scientific and technical publishing system built on Pandoc.

The list of continuous integration services and tools

Jenkins automation server

https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1

A dataset for loading zarr files to be used in machine learning training pipelines