Identification of differential RNA modifications from nanopore direct RNA sequencing

A universal toolkit for upstream processing of long RNA reads

from vibe coding to agentic engineering - practice makes claude perfect

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

Tools for plotting methylation data in various ways

🐪 The Perl programming language

An extremely fast Python package and project manager, written in Rust.

🦉 Data Versioning and ML Experiments

Empowering everyone to build reliable and efficient software.

A 2d game engine written in C

Write reusable, composable and modular R code

Nextflow implementation of scAutoQC pipeline

Tools for handling Unique Molecular Identifiers in NGS data sets

Genome-scale protein function classification

The ViennaRNA Package

A docker image containing the RNA algorithms needed by Assemble2

Image registration (alignment) software for large microscopy images

PCRE2 development is based here.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Versatile open-source tool for microbiome analysis

Sashimi plots for RNA-seq data using detected transcripts

A list of interesting genome browser and genome visualization programs

nucleic acid folding

A command line tool that draw plots on the terminal.

An implementation of the Grammar of Graphics in R

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Analysis of sequencing error profile for long read data.