AMBER - Ancient Metagenomic BinnER: damage-aware contrastive learning for ancient DNA binning

Software for ancestry estimation in unrelated individuals

✏️ A versatile DNA sequence optimizer

Update plant and arthropod metabarcoding reference databases using MetaCurator

Convert GTDB taxonomy to NCBI taxdump format

A simple tool to find virulence factors in ancient metagenomes

Add-on diagnostic tool for SourceTracker2

NGSNGS: Next generation simulator for next generation sequencing data

An R package providing helper functions to interact with timeseries of worldwide climate reconstructions

A simple tool to calculate metrics from a BAM file and filter references with uneven coverages

An efficient index for the colored, compacted, de Bruijn graph

format NCBI refseq genomes for non-prokaryotic taxa to integrate with GTDB

Calculate confidence scores from Kraken2 output

aMGSIM is an extension of MGSIM to create simulated ancient metagenome reads in multiple microbial synthetic communities.

Repository containing lists of all published ancient metagenomic (and related) samples and libraries

The next version of bwa-mem

A fast and sensitive gapped read aligner

de novo sequence assembler using string graphs

Scripts + data to recreate analyses published on http://benjaminlmoore.wordpress.com and http://blm.io

mapDamage: tracking and quantifying damage patterns in ancient DNA sequences