LCSk++: Practical similarity metric for long strings

Detect epigenetic/epitranscriptomic modifications

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

The batteries-included full-stack framework for the AI era. Develop JS/TS web apps (React, Node.js, and Prisma) using declarative code that abstracts away complex full-stack features like auth, bac…

minimizer extraction with python bindings

A pairwise sequence aligner written in Rust

Learning to untangle genome assembly with graph neural networks.

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Algorithms & Data Structures

SIMD partial order alignment tool/library

DNA Assembly Benchmark

DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)

SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which…

A new version of struct software