Code for 'Implicit Neural Image Field for Biological Microscopy Image Compression'

The paper list about deep learning based image compression

High-speed streamed assembly of nD tensors from zarr sources to GPU

cuda-oxide is an experimental Rust-to-CUDA compiler that lets you write (SIMT) GPU kernels in safe(ish), idiomatic Rust. It compiles standard Rust code directly to PTX — no DSLs, no foreign languag…

General purpose microscope control repository.

A formatter to make your CMake code the real treasure

The repository provides code for running inference and finetuning with the Meta Segment Anything Model 3 (SAM 3), links for downloading the trained model checkpoints, and example notebooks that sho…

Streaming directly to Zarr on the file system or S3

WebGL-based viewer for volumetric data

amazing retro keyboard made by https://github.com/juhakaup/

A Matrix client for Vim addicts

State of the art sorting and segmented sorting, including OneSweep. Implemented in CUDA, D3D12, and Unity style compute shaders. Theoretically portable to all wave/warp/subgroup sizes.

A nearly complete collection of prefix sum algorithms implemented in CUDA, D3D12, Unity and WGPU. Theoretically portable to all wave/warp/subgroup sizes.

Real-time feedback control microscopy for automation of optogenetic targeting

Multi-platform high-performance compute language extension for Rust.

Playing around "Less Slow" coding practices in C++ 20, C, CUDA, PTX, & Assembly, from numerics & SIMD to coroutines, ranges, exception handling, networking and user-space IO

A CodecPipeline for zarr-python backed by the zarrs Rust crate

dotfiles go brrr

Nix - Static, Permissionless, Installation-free, Pre-configured

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

Performance benchmarks of Zarr V3 implementations

cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.

Utilities for computing common accuracy metrics on cell tracking solutions with ground truth

Light microscopy simulation in python.

reusable widgets made easy