Merge pull request #208 from ncsa/develop

Develop

Merge pull request #181 from ncsa/develop

Develop

Merge pull request #179 from ncsa/develop

Bam creation working again

Merge pull request #175 from ncsa/develop

Develop

Merge pull request #164 from ncsa/develop

Develop

Merge pull request #154 from ncsa/144-break-uprecombine-larger-genomes

Parallelization - 144 break uprecombine larger genomes

Merge pull request #138 from ncsa/feature/fix_output

Feature/fix output

Fixing a bug when requested read length is different than the model

Merge pull request #129 from ncsa/develop

Develop

Merge pull request #125 from ncsa/develop

small refactoring for Markov model in development