fix capistrano release reporting script (for workflow) and unzipping …

…in aggregation

Fixed tests2 (#28)

* wip

* check enough reads

* run_test simpler

* reference to test

* not testing 76 bp

* comment on config

* sambamba shoudl use a little less memory from requested

* touch file for placeholder_r2 if fastq

* syntax error

* placeholder fix

* wip

* wip

* wip

* wip

* wip

* report all pipelines outputs

* wip

* wip

* wip

* all tests pass

* separate workflows to ensure order of execution

* tests with 2 workflows for safe placeholder_r2.fastq

* rm failed if file does not exists

* faster check enough reads

* enough reads checks file not softlink

* allow to write input without 1 for read1

* not OK and OK allows small variations from run to run

* cleaned up config

* read group in alignment should be one line

* tasmanian can retry with increased memory

* remove unwanted symbols

* need more ram for tasmanian