Stars
MetaboLights Validation Framework
An open-source data service. Share, edit, comment, review, and more. NOTE: Feel free to help make this a better service by forking, adding issues, etc. See the video for how to use in your lab.
A renderer to create PDF documents from odrl policies.
Intro to Machine Learning with the Tidyverse
NOMAD lets you manage and share your materials science data in a way that makes it truly useful to you, your group, and the community.
Standard Architecture for Trusted Research Environments specification
LLM-based ontological extraction tools, including SPIRES
Ontology Access Kit: A python library and command line application for working with ontologies
The Terminology Service Suite project is a collection of interactive widgets designed to ease the integration of terminology service functions into third-party applications.
Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural networks, FIORA models bond cleavages, fragment intensities, …
A Lipidomics Database Explorer Package
Webtool for the Lipid Librarian package
Python framework for Deep Learning in Proteomics
SDRF official validator and converts SDRF to pipeline configuration files
SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
Create jobs on a time-based schedule on Docker Swarm
ijava-jupyter-stack is a Jupyter Docker Stack image that's including the IJAVA Kernel to Jupyter notebook.
GPU-Jupyter: Your GPU-accelerated JupyterLab with a rich data science toolstack, TensorFlow and PyTorch for your reproducible deep learning experiments.
mzTab Reporting MS-based Proteomics and Metabolomics Results
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common t…