Ultra-fast preprocessing and quality control for long-read sequencing data

A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis

MISO: An open-source LIMS for NGS sequencing centres

12306智能刷票，订票

Personalized Reference Editor for Somatic Mutation discovery in cancer genomics

Truly parallel gzip decompression

Plot structural variant signals from many BAMs and CRAMs

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

Circular visualization in R

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Gene fusion detection and visualization

Deduplication for cfDNA sequencing data

(No maintenance) Detect gene fusion directly from raw fastq files

microsatellite instability detection using tumor only or paired tumor-normal data

Production-Grade Container Scheduling and Management

focus the papers of NGS

focus the papers of cancer

linux common commands

statistics cases with R in papers

SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

A list of deep learning implementations in biology

Teaching materials for the R package ggplot2