Stars
microntology: a lightweight, data-driven controlled vocabulary to describe Earth's microbial habitats.
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
Linter for Zotero. A plugin for Zotero to format item metadata. Shortcut to set title rich text; set journal abbreviations, university places, and item languages, etc; detect duplicate items.
Statistical Rethinking course and book package
Resources relating to data science.
Scripts and resources for the exploration of the molecular diversity, evolution and global biogeography of Radiolaria
Create stack bar plots and perform chi2 tests from EggNog Mapper annotations file.
Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.
Strain-level haplotyping for metagenomes with short or long-reads.
Metagenomics-related extended functionalities to samtools
Collection of scripts for preparing tree-files for FigTree
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
Various functions for analysis of microbial community data
jarioksa / MicEco
Forked from Russel88/MicEcoVarious functions for analysis of microbial community data
An extremely long review of R.
Hi! Welcome to the NPSG mixotrophs project, a study carried out by the MarVEL Team at University of Hawai'i at Manoa. More information can be found at https://sites.google.com/view/marvels-at-uh/home.
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
The NetGAM package takes species abundance data as input and uses generalized additive mixed models (gamms) in the mgcv package to model each species as a function of time-series predictor variables.
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
MaAsLin2: Microbiome Multivariate Association with Linear Models
Code and data included in "Oceanic heterotrophic flagellates are dominated by a few widespread taxa"