Stars
Python utilities for Manubot: Manuscripts, open and automated
Source markdown and contents of the CHTC website
Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"
A console script that allows you to easily update multiple git repositories at once
Making Protein Language Modeling Accessible to All Biologists
High accuracy RAG for answering questions from scientific documents with citations
List of papers about Proteins Design using Deep Learning
Graph Neural Network Library for PyTorch
An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
Quickly rewrite git repository history (filter-branch replacement)
Official repository for the paper "Variant effect prediction with reliability estimation across priority viruses"
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
List of software packages for multi-omics analysis
A community-curated list of resources related to self-driving labs which combine hardware automation and artificial intelligence to accelerate scientific discovery.
BEELINE: evaluation of algorithms for gene regulatory network inference
Jupyter Notebook Tutorials for Machine Learning in Chemistry (MLChem)
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
Implementation of Alphafold 3 from Google Deepmind in Pytorch
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Official repository for the ProteinGym benchmarks
A tool for automated uploading and version management of scientific data to Zenodo