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Repository to house the code and documentation for orchestration of distributed training of ML models for the PATh supplement. Initial experiments to focus on the Gitter Lab's METL framework.

Python 2 Updated Feb 13, 2026

ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.

Python 64 6 Updated Mar 7, 2025

Jupyter Notebook Tutorials for Machine Learning in Chemistry (MLChem)

Jupyter Notebook 14 3 Updated Jan 25, 2026

Official repository for the paper "Evaluating variant effect prediction across viruses"

Jupyter Notebook 19 2 Updated Mar 20, 2026
Python 97 4 Updated Mar 17, 2026

A community-curated list of resources related to self-driving labs which combine hardware automation and artificial intelligence to accelerate scientific discovery.

TeX 213 33 Updated Oct 17, 2025

Corner plots -- now with ads!

Python 23 Updated Mar 31, 2025

Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

Jupyter Notebook 661 111 Updated Mar 19, 2026

bioinformatics tools running on modal

Python 144 19 Updated Feb 18, 2026

Protein 3D structure prediction pipeline

HTML 99 64 Updated Mar 20, 2026

List of papers about Proteins Design using Deep Learning

1,904 218 Updated Mar 21, 2026

Results and data from the pilot round of the Protein Engineering Tournament

Jupyter Notebook 30 2 Updated Mar 25, 2025

Making Protein Language Modeling Accessible to All Biologists

Jupyter Notebook 158 19 Updated Mar 17, 2026

A tool for automated uploading and version management of scientific data to Zenodo

Python 44 11 Updated Mar 16, 2026

Fast semantic search for biorXiv manuscripts

Python 12 Updated Feb 16, 2025

Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"

250 16 Updated Mar 5, 2026

A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)

Python 102 9 Updated Jan 11, 2025

Authoring tools for scholarly communication. Create interactive web pages or formal research papers from markdown source.

TeX 157 12 Updated Dec 28, 2025

Curated list of interactive ML demos

358 12 Updated Mar 27, 2025

A list of manuscripts/tools using diffusion on biological enttieis

99 6 Updated Oct 5, 2023

A community site around scholarly single source publishing #SiSoPub

38 6 Updated Apr 1, 2023

LLM for Drug Editing, ICLR 2024

Python 157 9 Updated May 28, 2024

bioinformatics plotting and tools

Python 61 7 Updated Jun 3, 2024

ChemNLP project

Python 172 46 Updated Mar 16, 2026

High accuracy RAG for answering questions from scientific documents with citations

Python 8,298 844 Updated Mar 20, 2026

A walkthrough of transformer architecture code

Jupyter Notebook 383 66 Updated Feb 20, 2024
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