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Jupyter Notebook Tutorials for Machine Learning in Chemistry (MLChem)

Jupyter Notebook 8 3 Updated Oct 8, 2025

Official repository for the paper "Variant effect prediction with reliability estimation across priority viruses"

13 Updated Oct 23, 2025
Python 65 2 Updated Jul 22, 2025

A community-curated list of resources related to self-driving labs which combine hardware automation and artificial intelligence to accelerate scientific discovery.

TeX 187 30 Updated Oct 17, 2025

Corner plots -- now with ads!

Python 21 Updated Mar 31, 2025

Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

Jupyter Notebook 448 70 Updated Sep 22, 2025

bioinformatics tools running on modal

Python 107 16 Updated Nov 2, 2025

Protein 3D structure prediction pipeline

Nextflow 87 59 Updated Oct 24, 2025

List of papers about Proteins Design using Deep Learning

1,820 210 Updated Oct 31, 2025

Results and data from the pilot round of the Protein Engineering Tournament

Jupyter Notebook 30 2 Updated Mar 25, 2025

Making Protein Language Modeling Accessible to All Biologists

Jupyter Notebook 131 16 Updated Oct 29, 2025

Implementation of Alphafold 3 from Google Deepmind in Pytorch

Python 1,569 205 Updated Sep 18, 2025

A tool for automated uploading and version management of scientific data to Zenodo

Python 39 11 Updated May 16, 2025

Fast semantic search for biorXiv manuscripts

Python 12 1 Updated Feb 16, 2025

Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"

227 14 Updated Nov 5, 2025

A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)

Python 95 8 Updated Jan 11, 2025

Authoring tools for scholarly communication. Create interactive web pages or formal research papers from markdown source.

TeX 150 10 Updated Mar 24, 2025

Curated list of interactive ML demos

356 12 Updated Mar 27, 2025

A list of manuscripts/tools using diffusion on biological enttieis

97 6 Updated Oct 5, 2023

A community site around scholarly single source publishing #SiSoPub

35 7 Updated Apr 1, 2023

LLM for Drug Editing, ICLR 2024

Python 153 9 Updated May 28, 2024

bioinformatics plotting and tools

Python 59 6 Updated Jun 3, 2024

ChemNLP project

Python 165 46 Updated Nov 3, 2025

High accuracy RAG for answering questions from scientific documents with citations

Python 7,804 781 Updated Nov 5, 2025

A walkthrough of transformer architecture code

Jupyter Notebook 371 63 Updated Feb 20, 2024

Official repository for the ProteinGym benchmarks

HTML 360 45 Updated Jul 21, 2025
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