Skip to content
View agitter's full-sized avatar

Highlights

  • Pro

Organizations

@gitter-lab @manubot

Block or report agitter

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
16 stars written in Jupyter Notebook
Clear filter

PRML algorithms implemented in Python

Jupyter Notebook 11,673 3,241 Updated Apr 5, 2025

Handout for the tutorial "Creating publication-quality figures with matplotlib"

Jupyter Notebook 2,179 304 Updated Nov 20, 2022

Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

Jupyter Notebook 455 71 Updated Sep 22, 2025

Examples of using deep learning in Bioinformatics

Jupyter Notebook 438 133 Updated Mar 23, 2024

A walkthrough of transformer architecture code

Jupyter Notebook 371 63 Updated Feb 20, 2024

Convolutional neural network analysis for predicting DNA sequence activity.

Jupyter Notebook 267 106 Updated Sep 14, 2020

A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

Jupyter Notebook 263 68 Updated Aug 1, 2023

Making Protein Language Modeling Accessible to All Biologists

Jupyter Notebook 131 16 Updated Oct 29, 2025

List of resources for learning bioinformatics, from beginner to advanced

Jupyter Notebook 106 28 Updated Feb 16, 2018

Prize-Collecting Steiner Forests for Interactomes

Jupyter Notebook 62 22 Updated Jun 18, 2024

Graph regularized nonnegative matrix factorization (GNMF) in Python

Jupyter Notebook 45 19 Updated Mar 27, 2020

Results and data from the pilot round of the Protein Engineering Tournament

Jupyter Notebook 30 2 Updated Mar 25, 2025

Code from the ML4MI Boot Camp.

Jupyter Notebook 25 9 Updated Aug 24, 2021

Database of journal policies: TRANsparency in Scholarly Publishing for Open Scholarship Evolution

Jupyter Notebook 20 11 Updated Feb 5, 2021

Jupyter Notebook Tutorials for Machine Learning in Chemistry (MLChem)

Jupyter Notebook 9 3 Updated Oct 8, 2025

Getting to know the `Gen` probabilistic programming language

Jupyter Notebook 1 Updated Nov 21, 2019