Stars
Graph Neural Network Library for PyTorch
Quickly rewrite git repository history (filter-branch replacement)
High accuracy RAG for answering questions from scientific documents with citations
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
Simplified interface for TensorFlow (mimicking Scikit Learn) for Deep Learning
Make images look as if they are made out of 1x1 LEGO blocks
Implementation of Alphafold 3 from Google Deepmind in Pytorch
A console script that allows you to easily update multiple git repositories at once
Recipe for a General, Powerful, Scalable Graph Transformer
Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry
Python utilities for Manubot: Manuscripts, open and automated
BEELINE: evaluation of algorithms for gene regulatory network inference
Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
Generate a diff between two tabular datasets expressed in CSV files.
A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
A tool for automated uploading and version management of scientific data to Zenodo
This repository contains ClassificaIO, a Python package that provides a graphical user interface (GUI) for machine learning algorithms from scikit-learn.
Dimensionality reduction for single cell RNA-seq data
High-Throughput Computing in Python, powered by HTCondor
This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.