Graph Neural Network Library for PyTorch

Quickly rewrite git repository history (filter-branch replacement)

High accuracy RAG for answering questions from scientific documents with citations

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

Make images look as if they are made out of 1x1 LEGO blocks

Implementation of Alphafold 3 from Google Deepmind in Pytorch

A console script that allows you to easily update multiple git repositories at once

Recipe for a General, Powerful, Scalable Graph Transformer

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

OmegaFold Release Code

Python utilities for Manubot: Manuscripts, open and automated

Draw UpSet plots with Matplotlib

BEELINE: evaluation of algorithms for gene regulatory network inference

ChemNLP project

Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"

LLM for Drug Editing, ICLR 2024

bioinformatics tools running on modal

A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)

bioinformatics plotting and tools

Template job submissions using GPUs in CHTC

A tool for automated uploading and version management of scientific data to Zenodo

This repository contains ClassificaIO, a Python package that provides a graphical user interface (GUI) for machine learning algorithms from scikit-learn.

Dimensionality reduction for single cell RNA-seq data

High-Throughput Computing in Python, powered by HTCondor

Converts p-values in q-values, see (Storey and Tibshirani, 2003)

PyBioPAX: A python implementation of the BioPAX object model

Corner plots -- now with ads!